Closed izaak-coleman closed 5 years ago
it checks all the records are ok; it can't check that it is a correctly built graph from the input data, but it checks that it is all valid
So, if mccortex31 build
was writing a .ctx and killed during the write process (so, only half the records were output), assuming that all written records were ok, would mccortex31 check
detect the corruption? Thanks for your reply!
Yes, that's one thing we use it for
Great! Thanks Professor Iqbal.
I just wanted a sanity check - because i'm running on an unstable cluster that kills processes randomly - will
mccortex31 check
test a .ctx to see whether some precedingmccortex31
command successfully wrote all kmer records it intended to write to the .ctx? Or will it just check header corruption. I can see how corruption in the head could be tested (there are two CORTEX tags bounding the head). But is there a similar structure to check all intended kmer records were written?