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mcveanlab / mccortex

De novo genome assembly and multisample variant calling
https://github.com/mcveanlab/mccortex/wiki
MIT License
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Add common arg to configure walking: -a,--assembly #9

Open noporpoise opened 9 years ago

noporpoise commented 9 years ago

Configure graph walking with a common argument across commands: -a,--assembly [missInfoCheck=T|F,minCumulConf=,minStepConf=]

e.g. mccortex31 contigs --assembly missInfoCheck=F,minStepConf=0.99 graph.ctx > contigs.fa