Open karel-brinda opened 3 years ago
mccortex=v0.0.3-610-g400c0e3 zlib=1.2.11 htslib=1.8-17-g699ed53 ASSERTS=ON hash=Lookup3 CHECKS=ON k=3..31
Preparation:
wget http://ftp.ebi.ac.uk/pub/software/bigsi/nat_biotech_2018/ctx/ERR145/ERR1458685/cleaned/ERR1458685.ctx.bz2
Error:
$ bzcat -f ERR1458685.ctx.bz2 | mccortex31 unitigs -m 3G - [11 Sep 2020 13:34:00-ves][cmd] mccortex31 unitigs -m 3G - [11 Sep 2020 13:34:00-ves][cwd] /private/tmp/~20200911133112 [11 Sep 2020 13:34:00-ves][version] mccortex=v0.0.3-610-g400c0e3 zlib=1.2.11 htslib=1.8-17-g699ed53 ASSERTS=ON hash=Lookup3 CHECKS=ON k=3..31 [11 Sep 2020 13:34:00-ves][memory] 73 bits per kmer [11 Sep 2020 13:34:00-ves][memory] graph: 2.9GB [11 Sep 2020 13:34:00-ves][memory] total: 2.9GB of 16GB RAM [11 Sep 2020 13:34:00-ves] Output in FASTA format to STDOUT [11 Sep 2020 13:34:00-ves][hasht] Allocating table with 343,932,928 entries, using 2.6GB [11 Sep 2020 13:34:00-ves][hasht] number of buckets: 8,388,608, bucket size: 41 [11 Sep 2020 13:34:00-ves][graph] kmer-size: 31; colours: 1; capacity: 343,932,928 [11 Sep 2020 13:34:00-ves][FileFilter] Reading file - [1 src colour] [11 Sep 2020 13:34:00-ves][GReader] 18,446,744,073,709,551,615 kmers, 16EB filesize [11 Sep 2020 13:34:02-ves][graph_file_reader.c:364] Fatal Error: Couldn't read 'Coverages': expected 4; recieved: 0; [file: -]
mccortex=v0.0.3-610-g400c0e3 zlib=1.2.11 htslib=1.8-17-g699ed53 ASSERTS=ON hash=Lookup3 CHECKS=ON k=3..31
Preparation:
Error: