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mcveanlab / mccortex

De novo genome assembly and multisample variant calling
https://github.com/mcveanlab/mccortex/wiki
MIT License
113 stars 25 forks source link

How to build a graph from input file? #93

Closed jermp closed 3 years ago

jermp commented 3 years ago

Hi, I would like to do something trivial: build a graph from an input file (.fastq format). Yet, I haven't figured out how to do it nor I have found instructions in the readme.

Note that it should be a trivial thing to do...

I would like to run something like:

./mccortex31 build -k 31 --input in.fastq --output out.ctx

How can one do it?

Thanks, -Giulio

jermp commented 3 years ago

I figured out myself, by specifying:

-s 1 -1 <input_filename>

Crazy format... :)