Open jamesaoverton opened 3 weeks ago
@hoganwr When you have time, please start reviewing this PR. I suggest working through the commits in order.
My next step is to obsolete about 8000 duplicate DrOn terms.
After obsoleting the ~8000 DrOn terms with duplicate label+RxCUI pairs, I still have about 16 DrOn terms with duplicate labels but differing RxCUIs (some obsolete). I also have 668 duplicate RxCUIs in DrOn. Most seem to be obsolete or remapped by RxNorm. We'll discuss those on the next call.
I have completed a build in commit 3af928b9362296eaf4c916716bc6fd437629eda7 and it looks good. I have the build going on the subsequent commit.
I'm up to commit 4e8a376ce1822de1b45ed37518b17d08a7db1688
The new ChEBIs, which are referred to via term_replaced_by on obsoleted DrOn terms, are showing up at the top level. But I think that's easily fixed by updating the ChEBI import, and perhaps the subsequent commits accomplish that.
I'm going to go ahead and move to the next commit.
The new ChEBIs, which are referred to via term_replaced_by on obsoleted DrOn terms, are showing up at the top level. But I think that's easily fixed by updating the ChEBI import, and perhaps the subsequent commits accomplish that.
Ok, we'll be sure that's cleaned up before we commit.