augmented image and corresponding mask does not match

mdbloice / Augmentor

Image augmentation library in Python for machine learning.

https://augmentor.readthedocs.io/en/stable

MIT License

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augmented image and corresponding mask does not match #205

Closed eemberda closed 4 years ago

eemberda commented 5 years ago

Hi. I would like to ask for assistance. I tried to use Augmentor on the ISBI2012 dataset at https://imagej.net/Segmentation_of_neuronal_structures_in_EM_stacks_challenge_-_ISBI_2012 with the codes below. However, the output images and ground truths don't match.

isbi

p = Augmentor.Pipeline(ISBI2012_TRAIN_PATH+"/images") p.ground_truth(ISBI2012_TRAIN_PATH+"/gt") p.zoom_random(probability=0.5, percentage_area=0.8) p.sample(640)

mdbloice commented 4 years ago

Hi @eemberda, thanks for opening the issue, yes that's a bug and will be fixed today. I will write a message here once you can update via pip. Thanks again for pointing it out (and apologies for the delay). M.

mdbloice commented 4 years ago

Hi again @eemberda, the version on PyPI (version 0.2.7) now contains a fix for the issue you were having. You can update Augmentor using: pip install Augmentor --upgrade

eemberda commented 4 years ago

Thank you very much.

mdbloice commented 4 years ago

Sure thing. If you still encounter problems, just re-open the issue or open a new one. M.