SciPy: Fundamental Tools for Biomedical Research

[mdhaber]

Overview of "SciPy: Fundamental Tools for Biomedical Research".

• [x] False discovery rate controlling procedures (gh-17402)
• [ ] Adding examples to documentation (15/35)
  • [x] https://github.com/scipy/scipy/pull/17682
  • [x] https://github.com/scipy/scipy/pull/17707
  • [x] https://github.com/scipy/scipy/pull/17629
  • [x] https://github.com/scipy/scipy/pull/17610
  • [x] https://github.com/scipy/scipy/pull/17605
  • [x] https://github.com/scipy/scipy/pull/17747
  • [x] https://github.com/scipy/scipy/pull/17759
  • [x] https://github.com/scipy/scipy/pull/17765 (3x)
  • [x] https://github.com/scipy/scipy/pull/17773 (2x)
  • [x] https://github.com/scipy/scipy/pull/17778 (3x)
• [x] Survival analysis tools
  • [x] Kaplan-Meier estimator (Matt)
  • [x] Log-rank test (Pamphile)
  • [ ] Hazard function for all distributions (waiting for new infrastructure) Not adding.
• [x] Post hoc test
  • [x] Multivariate t CDF (gh-17410)
  • [x] Dunnett's test (Pamphile)
• [ ] Univariate distribution infrastructure overhaul
  • [x] elementwise root finder (gh-17719, gh-18719, gh-18728)
  • [x] elementwise minimizer (gh-18829)
  • [x] elementwise differentiation (gh-18811)
  • [x] elementwise quadrature (gh-18650)
  • [x] elementwise root bracketer (gh-18348)
  • [x] elementwise minimization bracketer (gh-19757)
  • [x] elementwise nsum (gh-19667)
  • [x] Array API-compatible _lazywhere (gh-18930)
  • [ ] Array API-compatible arbitrary precision array (https://github.com/mdhaber/mparray)
  • [x] continuous distribution infrastructure draft
  • [ ] add array API support to continuous distribution infrastructure support
  • [ ] merge continuous distribution infrastructure
  • [ ] add extensions (optional)
  • [ ] composite distribution
  • [ ] symmetric distribution
  • [ ] truncated distribution
  • [ ] wrapped distribution
  • [ ] folded distribution
  • [ ] double distribution
  • [ ] zero inflated distribution / upper censored distribution?
  • [ ] create scikit.distributions
  • [ ] distribution benchmark suite
  • [ ] discrete distribution infrastructure
  • [ ] implement essential distributions in new infrastructure
  • [ ] sample distribution infrastructure
• [ ] Stats function API consistency (axis / nan_policy tracker)
  • [x] https://github.com/scipy/scipy/pull/17971
  • [ ] https://github.com/scipy/scipy/pull/17983
  • [x] https://github.com/scipy/scipy/pull/18210
  • [x] https://github.com/scipy/scipy/pull/19303
  • [x] https://github.com/scipy/scipy/pull/19336
  • [x] https://github.com/scipy/scipy/pull/19350
• [ ] Hypothesis testing infrastructure
• [x] Issues (160 issues over the course of the project, assuming that each PR closes at least one open issue)
• [ ] SciPy for Biomedicine