SampleID:label
Read files suffix:fastq.gz
Number of Reads:0
ERROR: Bad read files name - expected format - label[delimiter]readID[delimiter][...]fastq.gz
Original reads files are expected under - /data/internal/ClaireMoore/cmoore_007.ube3d_rnaseq_2020
json_generator.py seems to be taking the header of the design file in as a read. This is "improper format" and caused the generate-json build process to fail. The analysis-specific JSON files were created, and I was able to continue by manually triggering downstream build-processes.
When triggering the Jenkins process "generate-configs", the generate-json component failed. The full log file can be found here:
data/scratch/rnaseq/ClaireMoore/cmoore_007.ube3d_rnaseq_2020/cmoore_007.1588785240/logs/json_generator.py.log
Excerpt here:
SampleID:label Read files suffix:fastq.gz Number of Reads:0 ERROR: Bad read files name - expected format - label[delimiter]readID[delimiter][...]fastq.gz Original reads files are expected under - /data/internal/ClaireMoore/cmoore_007.ube3d_rnaseq_2020
json_generator.py seems to be taking the header of the design file in as a read. This is "improper format" and caused the generate-json build process to fail. The analysis-specific JSON files were created, and I was able to continue by manually triggering downstream build-processes.