Ability to Run Subset Pipeline

mdibl / scscape

MIT License

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Ability to Run Subset Pipeline #16

Open RPSeaman opened 2 weeks ago

RPSeaman commented 2 weeks ago

Description of feature

An option to enter the pipeline at the post-merge step with a finalized Seurat object .rds. This would allow for subset analysis for a specific cell type for example.

Require a new module for subsetting:

subset by metadata col + idents in metadata column.
subset by barcodes (either include or exclude)

RPSeaman commented 2 weeks ago

also need to modify the way projections and clustering resolutions are named.