mdmparis / defense-finder-models

MacSyFinder models allowing for a systematic search of anti-phage systems
GNU General Public License v3.0
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Thoeris in two type #5

Closed Alexandre-Herve closed 2 years ago

Alexandre-Herve commented 2 years ago

BtsA is now BstA New system DarGT (TA) New system GasderMIN Retron IX definitions that was not good Modified BREX definitions for subsystem BREX Nhi new profile with protein found in the article with higher GA cut (100) RT from CAS is now exchangeables in RT with RT tot RT type I A and B now differeciate New Septu that include RT type I A protein (and RT tot forbidden) Separate Ssp and Dnd SspFGH are now add Ssp system is detected if there is at least BCD and SspE is not mandatory Rousset systems have been updated (systems removed) and 3 new systems. Add GA cut to DndE and gRAMP from Cas CBASS has been updated with new profiles GajB has been updated with to new profiles Modification of the structure to avoid overlap of HMM. Now there are 7 models that have to be run separatly.