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mdmparis / defense-finder

Systematic search of all known anti-phage systems.
GNU General Public License v3.0
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DefenseFinder update fails with the new release #16

Closed eloilit closed 1 year ago

eloilit commented 2 years ago

Hello, I'm having troubles installing DefenseFinder with the recent release of models.

I've built a new conda environment and installed DefenseFinder from scratch. Everything is fine until the command "defense-finder update" is typed. It yields the following error message :

image

Thanks in advance,

Eloi

eloilit commented 2 years ago

The problem looks very similar to the one described here: https://github.com/gem-pasteur/macsyfinder/issues/50#issuecomment-1183786551

JustdukeP commented 2 years ago

Hi, Have you tried this #8 ? https://github.com/mdmparis/defense-finder/issues/8 sudo macsydata install -U -u --org mdmparis defense-finder-models

It works for me to update after the same issue. But now I have to deal with issue #5 ... => OK with "sudo"

Guillaume

eloilit commented 2 years ago

Works well, thanks ! Didn't notice this issue ;)

JhonPhage commented 2 years ago

Hi, Have you tried this #8 ? https://github.com/mdmparis/defense-finder/issues/8 sudo macsydata install -U -u --org mdmparis defense-finder-models

It works for me to update after the same issue. But now I have to deal with issue #5 ... => OK with "sudo"

Guillaume

Thank you very much! It works for me too.

yayaHu commented 1 year ago

Hi, Have you tried this #8 ? https://github.com/mdmparis/defense-finder/issues/8 sudo macsydata install -U -u --org mdmparis defense-finder-models

It works for me to update after the same issue. But now I have to deal with issue #5 ... => OK with "sudo"

Guillaume

Works well for me too, Thx!