search

mdmparis / defense-finder

Systematic search of all known anti-phage systems.
GNU General Public License v3.0
75 stars 13 forks source link

failed run using nucleic acid pipeline and nucleic acid with crispr cas array #17

Closed afifpj closed 7 months ago

afifpj commented 2 years ago

Hi, just want to report some issues that I've found when I used the web version of DefenseFinder.

I tried several times using the nucleic acid pipeline, I tried using raw DNA sequence fasta (unannotated) and also one that I have annotated using prokka (coding sequence fasta file) as the input. However, when I tried to use those two kind of files in nucleic acids pipeline it ended up it "something went wrong", although I saw that the pipeline was running ok. Is there any solution for this? It seemed to me that the software is currently working with protein fasta file only (if I not mistaken) but if I used this format I could not detect the CRISPR cas array.

Thank you for your attention, looking forward to hearing from you. Kind regards,

github-actions[bot] commented 7 months ago

This issue has been inactive for 60 days and is now marked as stale. It will be closed in 7 days without further activity.