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mdmparis / defense-finder

Systematic search of all known anti-phage systems.
GNU General Public License v3.0
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IndexError: list index out of range when running 'defense-finder update' #21

Closed ZongzhiWu closed 7 months ago

ZongzhiWu commented 1 year ago

When I ran the command 'defense-finder update' on HPC, I came across the following issue: Downloading defense-finder-models (1.2.2). Extracting defense-finder-models (1.2.2). Removing old models /tmp/tmp-macsy-cache/mdmparis/defense-finder-models/1.2.2/defense-finder-models Traceback (most recent call last): File "/gpfs/share/home/2201112334/miniconda3/bin/macsydata", line 8, in sys.exit(main()) File "/gpfs/share/home/2201112334/miniconda3/lib/python3.9/site-packages/macsypy/scripts/macsydata.py", line 938, in main parsed_args.func(parsed_args) File "/gpfs/share/home/2201112334/miniconda3/lib/python3.9/site-packages/macsypy/scripts/macsydata.py", line 348, in do_install dest = config.models_dir()[0] IndexError: list index out of range

ZongzhiWu commented 1 year ago

It has been solved after running this command 'macsydata install -U -u --org mdmparis defense-finder-models'.

github-actions[bot] commented 8 months ago

This issue has been inactive for 60 days and is now marked as stale. It will be closed in 7 days without further activity.