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mdmparis / defense-finder

Systematic search of all known anti-phage systems.
GNU General Public License v3.0
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Command to update models #34

Closed rplanel closed 4 months ago

rplanel commented 11 months ago

When running defense-finder update and models already exist, the cli print : 

Requirement already satisfied: defense-finder-models>1.2.2 in /home/rplanel/.macsyfinder/models/defense-finder-models.
To force installation use option -f --force-reinstall.
Requirement already satisfied: CasFinder>3.1.0 in /home/rplanel/.macsyfinder/models/CasFinder.
To force installation use option -f --force-reinstall.
Requirement already satisfied: CasFinder>3.1.0 in /home/rplanel/.macsyfinder/models/CasFinder.
To force installation use option -f --force-reinstall.

So it suggests to run : defense-finder update --force-reinstall. when I do so, it says the option doesn't exist 

Usage: defense-finder update [OPTIONS]
Try 'defense-finder update --help' for help.

Error: No such option: --force-reinstall
jeanrjc commented 9 months ago

We need to fix that. It's a MacsyFinder option, and we need to make it available from DefenseFinder.

github-actions[bot] commented 6 months ago

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