Defense finder failed to run

[sujeetpowar]

Hi, I am getting this error when I try to run defense finder on gembase format(protein).

Traceback (most recent call last): File "/home/sujeet/miniconda3/envs/defensefinder/bin/defense-finder", line 10, in sys.exit(cli()) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/click/core.py", line 1157, in call return self.main(args, kwargs) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/click/core.py", line 1078, in main rv = self.invoke(ctx) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/click/core.py", line 1688, in invoke return _process_result(sub_ctx.command.invoke(sub_ctx)) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/click/core.py", line 1434, in invoke return ctx.invoke(self.callback, ctx.params) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/click/core.py", line 783, in invoke return __callback(args, **kwargs) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/defense_finder_cli/main.py", line 143, in run defense_finder.run(protein_file_name, dbtype, workers, coverage, tmp_dir, models_dir, no_cut_ga, loglevel) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/defense_finder/init.py", line 29, in run macsyfinder.main(args=msf_cmd) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/macsypy/scripts/macsyfinder.py", line 1193, in main all_systems, rejected_candidates = search_systems(config, model_registry, models_def_to_detect, logger) File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/macsypy/scripts/macsyfinder.py", line 577, in search_systems systems, rejected_candidates = _search_in_ordered_replicon(hits_by_replicon, models_to_detect, File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/macsypy/scripts/macsyfinder.py", line 606, in _search_in_ordered_replicon rep_info = rep_db[rep_name] File "/home/sujeet/miniconda3/envs/defensefinder/lib/python3.10/site-packages/macsypy/database.py", line 437, in getitem return self._DB[replicon_name] KeyError: 'HEPY.1223.00003.0001i'

Could you please let me know how to fix this error?

[jeanrjc]

Hello, thanks for the report.

I'm closing this issue in favor of the one you posted on macsyfinder : https://github.com/gem-pasteur/macsyfinder/issues/68