Question of reduce the iops of shared-disk operations

mdmparis / defense-finder

Systematic search of all known anti-phage systems.

GNU General Public License v3.0

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Question of reduce the iops of shared-disk operations #49

Closed cron-weasley closed 5 months ago

cron-weasley commented 7 months ago

Dear Author, I use defense-finder for lots of jobs with a HPC cluster of slurm job scheduler and a shared-storage. I found that defense-finder will seek/open/state a lots of database files when it runs. So I want to ask, is there some command parameter that I can reduce the shared-storage's iops? For example as specify a parameters --tmp_dir=/tmp or --memdb to load all DB to memory once to speed up process and reduce iops. Thanks a lot!

github-actions[bot] commented 5 months ago

This issue has been inactive for 60 days and is now marked as stale. It will be closed in 7 days without further activity.