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mdmparis / defense-finder

Systematic search of all known anti-phage systems.
GNU General Public License v3.0
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macsyfinder:"No such model definition: 'defense-finder-models'" #57

Closed yaojian1997 closed 4 months ago

yaojian1997 commented 5 months ago

(defensefinder) zhaoxy@tang-Precision-7920-Tower:/labdata_2/miniconda2/envs/defensefinder$ defense-finder run YJ0111A.13.fa 2024-03-25 19:44:59 | INFO | Received file YJ0111A.13.fa 2024-03-25 19:44:59 | WARNING | Out directory /labdata_2/miniconda2/envs/defensefinder already exists. Existing DefenseFinder output will be overwritten 2024-03-25 19:44:59 | INFO | YJ0111A.13.fa is a nucleotide fasta file. Prodigal will annotate the CDS 2024-03-25 19:45:01 | INFO | Prodigal annotated 13 replicons 2024-03-25 19:45:02 | INFO | Protein files written in /labdata_2/miniconda2/envs/defensefinder/YJ0111A.13.prt 2024-03-25 19:45:02 | INFO | 2638 CDS were annotated 2024-03-25 19:45:02 | INFO | Running DefenseFinder macsyfinder: "No such model definition: 'defense-finder-models'"

Requesting help, thank you very much

jeanrjc commented 4 months ago

You need to install the model first. Read the readme.