`replicon` fused to `sys_id` in `defense_finder_genes` output

mdmparis / defense-finder

Systematic search of all known anti-phage systems.

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`replicon` fused to `sys_id` in `defense_finder_genes` output #61

Closed ezherman closed 4 months ago

ezherman commented 4 months ago

Using this E. coli reference genome as an example, with defense-finder v1.2.2:

defense-finder run GCF_001721125.1.faa -o dfinder_test -w 8

# subset the sys_id column
csvcut -t -c sys_id dfinder_test/GCF_001721125.1_defense_finder_genes.tsv 

sys_id
GCF_001721125.1_PD-T7-4_1

I am guessing this is not the intended behaviour - if it is, feel free to close this issue.

jeanrjc commented 4 months ago

It's expected.