I am getting an error while running the script at this line . I have prepared the data and have TAR installed too. Please help. I really need to pull this through.

mdozmorov / TCGAsurvival

Scripts to analyze TCGA data

GNU General Public License v3.0

115 stars 41 forks source link

Closed ksrinivasprabhu1999 closed 3 years ago

ksrinivasprabhu1999 commented 4 years ago

https://github.com/mdozmorov/TCGAsurvival/blob/a2037ee35ffc17ff79de77e60de1d0fac34367c1/survival.Rmd#L85 Error in apply(mtx$clinical, 2, function(x) length(table(x[!(is.na(x) & : dim(X) must have a positive length Thank you.

mdozmorov commented 4 years ago

Share the whole file, so I can try to reproduce. If the data is prepared correctly, there shouldn't be any error at this line.

ksrinivasprabhu1999 commented 3 years ago

I am running the demo shown here, could you tell me what all data I need to store in the dir to process the code ?

ksrinivasprabhu1999 commented 3 years ago

I am running the demo shown here, could you tell me what all data I need to store in the dir to process the code ?

data.TCGA/EINAV_INTERFERON_SIGNATURE_IN_CANCER.txt I could not find this is in data.TCGA.