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mdozmorov / genome_runner

Academic Free License v3.0
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Add -s (--score) and -p (--padj) command line switches to hypergeom4 #20

Closed mdozmorov closed 10 years ago

mdozmorov commented 10 years ago

Currently, server.py calls hypergeom4 with settings for the score and p-value adjustment method. Hypergeom4 lacks command line switches to use these settings from command line.

lkscara commented 10 years ago

Score filtering is not needed since we create the GF files, with the dbcreator, which are filtered by a score threshold.