mdozmorov / genome_runner

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Score for overlap calculations #6

Closed mdozmorov closed 10 years ago

mdozmorov commented 10 years ago

For those tables that have a "score" column, get use of it. Ideally, a user can specify percentile of score range to be used.

It is an open question how to technically implement it.

mdozmorov commented 10 years ago

Strategy: pre-process data into grsnp_db/. Each subfolder would have a postfix, e.g., hg19_100 or hg19_60 (all or top 60% of the data filtered by score).

Suggestion: dbcreator may do it automatically, provided an array of thresholds (may be hardcoded). Example: [100, 75, 50, 25]

lkscara commented 10 years ago

How about we use the following structure? //default, without score filtering /home/USER/Documents/db[version][date]/grsnp_db //Create a new grsnpdb with [percent score] appended at the end /home/USER/Documents/db[version]_[date]/grsnpdb[percent score]

mdozmorov commented 10 years ago

Web interface works