search

mdshw5 / fastqp

Simple FASTQ quality assessment using Python
https://pypi.python.org/pypi/fastqp
MIT License
108 stars 14 forks source link

Calculate observed/expected ratio for kmers #8

Closed mdshw5 closed 9 years ago

mdshw5 commented 9 years ago

Two cases:

  1. Unguided null distribution where expected frequency is computed using draws from a uniform distribution of ACTG
  2. Transcriptome-guided null distribution where a 1) GTF and 2) fasta file are provided and sequences are sampled from exons and UTRs.

cc: @jmerkin