Consolidate long name methods to all use `long_name`

[michaelbarton]

How is this? I think this is what you requested.

[codecov-io]

Codecov Report

Merging #109 into master will decrease coverage by 0.25%. The diff coverage is 33.33%.

@@            Coverage Diff             @@
##           master     #109      +/-   ##
==========================================
- Coverage   76.72%   76.47%   -0.26%     
==========================================
  Files           2        2              
  Lines         795      799       +4     
==========================================
+ Hits          610      611       +1     
- Misses        185      188       +3

Impacted Files	Coverage Δ
pyfaidx/cli.py	47.84% <0%> (ø)	:arrow_up:
pyfaidx/__init__.py	88.18% <40%> (-0.45%)	:arrow_down:

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[mdshw5]

Hey @michaelbarton. This looks like a great contribution, and I have no problem merging it. Thanks for taking the time to make the change - I'll push out a new minor version!

[michaelbarton]

Thanks Matt for this library. I have been using it recently a project and I found it very useful. https://gitlab.com/michaelbarton/gaet/

[mdshw5]

Looks like a pretty cool tool you've got there. The idea is the assess the quality of assemblies based on previous feature annotation? What's a common use case?

[michaelbarton]

Yes that's exactly it. If you have a reference assembly and you want to benchmark an assembler you can compare the generated assembly's annotations with that of the reference's annotation. We're using it to determine which assemblers produce complete rRNA operons and so forth.

For example we genomes for which we have both pacbio and illumina sequencing data. We use the pacbio assembly as the reference since they are generally very high quality, then benchmark various assemblers using the illumina data.