Add support for reading from S3

mdshw5 / pyfaidx

Efficient pythonic random access to fasta subsequences

https://pypi.python.org/pypi/pyfaidx

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Closed palakpsheth closed 6 years ago

palakpsheth commented 6 years ago

migrate standard python open commands to smart_open commands from library: https://github.com/RaRe-Technologies/smart_open in order to support fastas and indexes located on s3 or hdfs