Support for constructing and using GZI format files for BGZF compressed FASTA

mdshw5 / pyfaidx

Efficient pythonic random access to fasta subsequences

https://pypi.python.org/pypi/pyfaidx

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Open mdshw5 opened 4 years ago

mdshw5 commented 4 years ago

This is a work-in-progress implementation for #126 and much doesn't work properly.

ThomVett commented 1 year ago

Hello all - wanted to ask about the progress of this pull request? Any way we can help with testing / contributing? Thanks!

dennishendriksen commented 1 year ago

@mdshw5: same as @ThomVett I'm interested in the progress of this pull request as a solution to https://github.com/whatshap/whatshap/issues/151 which is included in https://github.com/HKU-BAL/Clair3/issues/163 which in turn is the most popular variant calling library for long-read sequencing data.