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mdshw5 / pyfaidx

Efficient pythonic random access to fasta subsequences
https://pypi.python.org/pypi/pyfaidx
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Bump pysam from 0.19.1 to 0.20.0 #201

Closed dependabot[bot] closed 1 year ago

dependabot[bot] commented 1 year ago

Bumps pysam from 0.19.1 to 0.20.0.

Release notes

Sourced from pysam's releases.

pysam-v0.20.0

Release 0.20.0

This release wraps htslib/bcftools version 1.16 and samtools version 1.16.1.

  • #1113 Full compatibility with setuptools v62.1.0's build directory name changes
  • #1121 Build-time symbol check portability improved
  • #1122 Fix setting sample genotype using .alleles property
  • #1128 Fix test suite failure when using a libdeflate-enabled samtools

Many additional type hints have been provided by the community, thanks!

This will be the last release with python2.7 support.

Changelog

Sourced from pysam's changelog.

Release 0.20.0

This release wraps htslib/bcftools version 1.16 and samtools version 1.16.1.

  • #1113 Full compatibility with setuptools v62.1.0's build directory name changes
  • #1121 Build-time symbol check portability improved
  • #1122 Fix setting sample genotype using .alleles property
  • #1128 Fix test suite failure when using a libdeflate-enabled samtools

Many additional type hints have been provided by the community, thanks!

Commits
  • b7fd112 Release notes updates
  • d57e883 Merge pull request #1141 from pysam-developers/version-0.20.0
  • 4792ecf Tidy up shared mode htslib_library_dirs
  • 01c0c70 set version to 0.20.0
  • bad000c Merge pull request #1140 from jmarshall/import-1.16.1
  • 4228436 Build libhts.a via HTSlib's Makefile instead of as Python ext
  • fef6567 Don't check for symbol conflicts when HTSLIB_MODE=separate
  • 13ba0d6 Update the GitHub Actions used to their latest versions
  • e23c7fe Add sysconfig's CCSHARED to the computed CFLAGS
  • d18e17a Add new samtools reference command
  • Additional commits viewable in compare view


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dependabot[bot] commented 1 year ago

OK, I won't notify you again about this release, but will get in touch when a new version is available. If you'd rather skip all updates until the next major or minor version, let me know by commenting @dependabot ignore this major version or @dependabot ignore this minor version. You can also ignore all major, minor, or patch releases for a dependency by adding an ignore condition with the desired update_types to your config file.

If you change your mind, just re-open this PR and I'll resolve any conflicts on it.