search

mdshw5 / pyfaidx

Efficient pythonic random access to fasta subsequences
https://pypi.python.org/pypi/pyfaidx
Other
459 stars 75 forks source link

27 tests fail on `=pyfaidx-0.7.2.1` #208

Closed TheChymera closed 1 year ago

TheChymera commented 1 year ago

Full build log here: https://ppb.chymera.eu/061324.log

Any ideas what could be wrong? I know that the package formerly used nose, is this an issue arising from work-in-progress test infrastructure transition?

mdshw5 commented 1 year ago

This package now uses pytest, and so the test runners are slightly different now. You can see the output from a recent CI run here. From glancing at your log file it looks like the error message are due to biopython not being installed. The biopython package is required for all "bgzf" tests, and so these should all be skipped. I'm not sure why your testing infrastructure is running the skipped tests though.