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medema-group / BiG-SCAPE

Similarity networks of biosynthetic gene clusters
GNU Affero General Public License v3.0
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Network_Annotations_Full.tsv result #156

Closed liangly1 closed 4 hours ago

liangly1 commented 1 month ago

Hello, I used the results obtained from the antismash software as input to a specified folder and got the Network_Annotations_Full.tsv file. Why does the BGC column in the table show results like BGC0000001, BGC0000002? Shouldn't it output the names of the gbk files I input, such as ABTEK_DN1_1.region001?I have another question. Hello, I was able to open the webpage after switching to a different browser, but I have another question. Why does it only show one specified genome? I have 45 folders under the antismash_res directory, each representing a different genome. The input directory is the result folder obtained from Antismash.

jorgecnavarrom commented 1 month ago

Why does the BGC column in the table show results like BGC0000001, BGC0000002?

Those are the MIBiG reference BGCs. Did you use option --mibig?

Why does it only show one specified genome? I have 45 folders

The number of genomes is not based on the number of folders in your input_folder but rather on the information on each gbk header (so if you have several repeated names like "contig001.region001", it will only be counted once)

github-actions[bot] commented 4 hours ago

This issue has been stale for 14 days and has been closed. Please feel free to re-open this issue if necessary.