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medema-group / bigslice

A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
GNU Affero General Public License v3.0
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- __main__ - ERROR - An error occurred while downloading bigslice_models.tar.gz #78

Closed liuliuliu0304 closed 8 months ago

liuliuliu0304 commented 11 months ago

Hello,I got a problem when i was using comand ''download_bigslice_hmmdb''. It seems that there is an error ocurring in downloading:''main - ERROR - An error occurred while downloading bigslice_models.tar.gz: {e}''

DDDDimi commented 11 months ago

same to you

davidkubanek commented 9 months ago

I got the same. If you look into the docker file it holds 'RUN download_bigslice_hmmdb https://s3.amazonaws.com/share.jgi-ga.org/satria/bigslice-models.2022-11-30.tar.gz'.

Try running the full command with the link included: $ download_bigslice_hmmdb https://s3.amazonaws.com/share.jgi-ga.org/satria/bigslice-models.2022-11-30.tar.gz

If that does not work, you can manually do what the 'download_bigslice_hmmdb' exec file is supposed to do. If you inspect the exec file, it gives info about what is supposed to happen and replicate it:

  1. Download the necessary file manually using the link: https://s3.amazonaws.com/share.jgi-ga.org/satria/bigslice-models.2022-11-30.tar.gz
  2. Unzip it
  3. Rename the file to ‘models_folder’ OR place the unzipped folder into a new folder called 'models_folder'
  4. Delete zip file
  5. Continue with the quick start guide (you might stumble on new issues unrelated to this one)

I got everything to work more easily using GitHub Codespaces by launching the virtual machine from the docker file.

liuliuliu0304 commented 9 months ago

I got the same. If you look into the docker file it holds 'RUN download_bigslice_hmmdb https://s3.amazonaws.com/share.jgi-ga.org/satria/bigslice-models.2022-11-30.tar.gz'.

Try running the full command with the link included: $ download_bigslice_hmmdb https://s3.amazonaws.com/share.jgi-ga.org/satria/bigslice-models.2022-11-30.tar.gz

If that does not work, you can manually do what the 'download_bigslice_hmmdb' exec file is supposed to do. If you inspect the exec file, it gives info about what is supposed to happen and replicate it:

  1. Download the necessary file manually using the link: https://s3.amazonaws.com/share.jgi-ga.org/satria/bigslice-models.2022-11-30.tar.gz
  2. Unzip it
  3. Rename the file to ‘models_folder’ OR place the unzipped folder into a new folder called 'models_folder'
  4. Delete zip file
  5. Continue with the quick start guide (you might stumble on new issues unrelated to this one)

I got everything to work more easily using GitHub Codespaces by launching the virtual machine from the docker file.

Thank you so much for helping me solve this problem .

satriaphd commented 8 months ago

should be fixed now with 2.0!