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medvedevgroup / SibeliaZ

A fast whole-genome aligner based on de Bruijn graphs
http://medvedevgroup.com/
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twopaco: symbol lookup error #24

Open tderrien opened 3 years ago

tderrien commented 3 years ago

Hello,

I installed SibeliaZ with conda on our cluster where I do not have root permissions. Here the output : 

sibeliaz $genome1 $genome2
Constructing the graph...
twopaco: symbol lookup error: twopaco: undefined symbol: _ZN3tbb8internal24concurrent_queue_base_v818internal_push_moveEPKv
TwoPaco: 0.00 seconds elapsed, 1332 KB memory used
Loading the graph...
error: Can't read the input file
SibeliaZ-LCB: 0.00 seconds elapsed, 2036 KB memory used
rm: cannot remove './sibeliaz_out/de_bruijn_graph.dbg': No such file or directory
Performing global alignment..
find: './sibeliaz_out/blocks': No such file or directory
find: './sibeliaz_out/blocks': No such file or directory
Alignment: 0.02 seconds elapsed, 1568 memory used

Thank you for your help.

Thomas

iminkin commented 3 years ago

Hi, sorry for the late reply. Could you please provide extra details about the system you used? Particularly, the version of the operation system.

iminkin commented 3 years ago

A possible solution can be found here: https://github.com/medvedevgroup/SibeliaZ/issues/28