make install step : ";"

medvedevgroup / SibeliaZ

A fast whole-genome aligner based on de Bruijn graphs

http://medvedevgroup.com/

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make install step : ";" #9

Open eylenth opened 5 years ago

eylenth commented 5 years ago

When I am running the make install step in the installation procedure. I see the following error at 58%

[ 58%] Building CXX object TwoPaCo/src/graphdump/CMakeFiles/graphdump.dir/graphdump.cpp.o
cd ${BUILDDIR}/TwoPaCo/src/graphdump && ${GCC_INSTALL_DIR}/bin/g++   -I${BUILDDIR}/TwoPaCo/src/graphdump/../common  -O2 -ftree-vectorize -march=native -fno-math-errno;-std=c++11 -lstdc++ -O3 -DNDEBUG   -o CMakeFiles/graphdump.dir/graphdump.cpp.o -c ${BUILDDIR}/TwoPaCo/src/graphdump/graphdump.cp

I do not know where this ";" comes from between-fno-math-errno and -std=c++11, but it should be replaced by a space.

iminkin commented 5 years ago

Interesting. Which version of CMake do you use?

eylenth commented 5 years ago

I am using CMake version 3.12.1

iminkin commented 5 years ago

Sorry, I could not reproduce your issue. Could you please update your cmake installation? Please let me know if it does not help, I will add a binary distribution in the repo.

iminkin commented 5 years ago

I added the binaries: https://github.com/medvedevgroup/SibeliaZ/releases/download/v1.2.0/SibeliaZ-1.2.0-Linux.tar.gz

eylenth commented 5 years ago

I am already using a recent version of Cmake. What version do you recommend?

But it seems the precompiled binaries are working

iminkin commented 5 years ago

@eylenth,

I am glad that the binaries are working. I'd try the latest CMake which is 3.15.3: https://cmake.org/download/.

LLS007 commented 4 years ago

I am using CMake version 3.12.1

if I can ask you some questions about how to install the sibeliaz, when I try to install the sibeliaz, I find it don't work