search

medvedevgroup / TwoPaCo

A fast constructor of the compressed de Bruijn graph from many genomes
Other
39 stars 10 forks source link

`twopaco` and `graphdump` functions not found #21

Closed dombraccia closed 5 years ago

dombraccia commented 5 years ago

Hello,

I am interested in using twopaco on a set of bacterial reference genomes, though I am running into issues.

I cloned the repo and went through the build steps mentioned in the README, though after the build, I can't seem to run the twopaco command.

bash: twopaco: command not found bash: graphdump: command not found

I can't locate in which directory the command exists or needs to be run from. I am somewhat new to building tools written in C, so pardon my ignorance on the topic.

I am working on a HPC which has C++ version 11 or higher and the required TBB libraries and version of cmake. The tool built without issue.

Thanks, Domenick

dombraccia commented 5 years ago

sorry, found that it is in the graphconstructor directory.