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medvedevgroup / TwoPaCo

A fast constructor of the compressed de Bruijn graph from many genomes
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Present API for pufferfish #30

Open merkys opened 1 year ago

merkys commented 1 year ago

TwoPaCo is used by Pufferfish which currently embeds a patched code copy of TwoPaCo. Patches seem to transform main() function to make it callable in C/C++ code circumventing the command line interface. Would it be possible to merge Pufferfish's patches to TwoPaCo? This way Pufferfish could be linked against static/shared library of TwoPaCo. In addition, I believe such command line-circumventing API could be useful for other users of TwoPaCo preferring static type checking, for example.

iminkin commented 1 year ago

Hi,

Thank you for the suggestion! I will consider adding an API interface in the future version(s).