Unable to create temp file

medvedevgroup / TwoPaCo

A fast constructor of the compressed de Bruijn graph from many genomes

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Closed ChriKub closed 7 years ago

ChriKub commented 7 years ago

Hi,

in all my runs, independent of the provided location TwoPaCo is unable to create a temp file at the given location.

twopaco --tmpdir /home/TwoPaCo/tmp/ --test -t 1 -k 11 -f 20 -o /home/TwoPaCo/test.dbg /home/TwoPaCo/examples/example.fa

What am I doing wrong here?

Thanks, Chris

iminkin commented 7 years ago

Do you have permission to write in the temporary folder?

ChriKub commented 7 years ago

Yes. I have the permission to write in the /tmp folder of the file system as well as in the /home/TwoPaCo/tmp/ folder I created for TwoPaCo

iminkin commented 7 years ago

Are you trying to use the master branch?

ChriKub commented 7 years ago

Yes

ChriKub commented 7 years ago

After an update it seems that it only happens when using --test

iminkin commented 7 years ago

Fixed in 0.9.2.