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medvir
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SmaltAlign
Quick iterative alignment of reads against a given reference using smalt.
MIT License
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Please use set -e (ideally set -euo pipefail) in smaltalign*.sh shell scripts to make them fail early & loudly
#13
Masterxilo
opened
1 year ago
3
How to deal with paired-end sequencing file
#12
rongfengchen
closed
1 year ago
1
Please document how to download, install and run this program in your preferred way
#11
Masterxilo
opened
1 year ago
0
Please parametrize: minimal coverage required (reads), minimal_coverage <- 3
#10
Masterxilo
opened
1 year ago
0
Please parametrize: minority variant threshold (%) variant_threshold <- 15
#9
Masterxilo
opened
1 year ago
0
"unexpected insertion" error
#8
MaryamZaheri
opened
2 years ago
0
=-=-= lofreq with 0 cores =-=-=
#7
Masterxilo
closed
1 year ago
1
wts.R creates wobble Positionen with AF >90%
#6
sschmutz
opened
3 years ago
3
wts.R and cov_plot.R hashbang, location of Rscript
#5
mihuber
closed
5 years ago
3
batch-influenza
#4
sschmutz
closed
6 years ago
1
Improve batch script
#3
sschmutz
closed
6 years ago
0
lofreq doesn't run if amount of cores is below 10
#2
sschmutz
closed
6 years ago
3
List dependencies in requirements.txt
#1
sschmutz
closed
7 years ago
1