Open ozagordi opened 6 years ago
covplot reports number of reads from samtools idxstats that counts the number of alignments, not the number of reads. For genomes with repetitive regions, this leads to overestimate the read counts.
covplot
samtools idxstats
covplotreports number of reads fromsamtools idxstatsthat counts the number of alignments, not the number of reads. For genomes with repetitive regions, this leads to overestimate the read counts.