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meetU-MasterStudents / 2019---2020-partage

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sequence databases #10

Open elolaine opened 5 years ago

elolaine commented 5 years ago

Hi,

For the SU students, thanks to Nathalie Picot, you now have access to useful sequence databases on the TME machines : uniref90 : /Infos/BIM/MU5IN757/uniref90/uniref90.fasta uniref50 : /Infos/BIM/MU5IN757/uniref90/uniref50.fasta swissprot : /Infos/BIM/MU5IN757/swissprot/

Elodie

emorice commented 5 years ago

@annelopes Is there an equivalent available for psud students ?

annelopes commented 5 years ago

For now, you can dowload these databases here:

Swissprot

https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download here is the doc : ftp://ftp.ncbi.nlm.nih.gov/blast/documents/blastdb.html.

Uniref:

https://www.uniprot.org/downloads

We are currently discussing with IFB the ppossibility to give you access to their cluster and their storage so that you could directly screen these db on their server. It takes time, sorry. We keep you in touch ASAP.

ffrancafrat commented 5 years ago

Dear Anne and Elodie, thanks for keeping us updated, I would like to suggest that the email for the students are flagged separately from the e-mails for the lecturers-examiners so that we do not get confused on our duties and we focus on the material we have to access without being flooded by mails that we may disregard as not relevant to us, I hope it makes sense, thanks a lot for all you effort in this, it is a great programme!

Best wishes ff

On Tue, 8 Oct 2019 at 11:35, Anne Lopes notifications@github.com wrote:

For now, you can dowload these databases here: Swissprot

https://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&PAGE_TYPE=BlastDocs&DOC_TYPE=Download here is the doc : ftp://ftp.ncbi.nlm.nih.gov/blast/documents/blastdb.html. Uniref:

https://www.uniprot.org/downloads

We are currently discussing with IFB the ppossibility to give you access to their cluster and their storage so that you could directly screen these db on their server. It takes time, sorry. We keep you in touch ASAP.

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annelopes commented 5 years ago

Thanks for your comment Franca and sorry for the inconvenience.

For all jury members who do not prefer to receive our multiples issues, we recommand you to put your account in "unwatch" mode :) Sorry again for the inconvenience,

cheers,

A.