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meglab-metagenomics
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amrplusplus_v2
MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data
http://megares.meglab.org/
MIT License
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Unknown variable 'BWA' -- Make sure you didn't misspell it or define somewhere in the script before use it
#24
hhhhhywww
opened
2 years ago
0
ExtractDedupSNP Error
#23
djbradshaw2
opened
2 years ago
0
Empty resistome and rarefaction results
#22
TakacsBertalan
opened
2 years ago
0
main_AmrPlusPlus_v2_withRGI.nf
#21
XC-Zhai
opened
3 years ago
1
RGI version
#20
jannemm
opened
3 years ago
0
problems for installation
#19
chaichai9522
closed
3 years ago
0
Error running amr +++
#18
senukobla
opened
3 years ago
0
Error messages from nextflow run main_AmrPlusPlus_v2_withRGI.nf
#17
srjun
opened
3 years ago
1
Warning messages from nextflow run main_AmrPlusPlus_v2.nf
#16
srjun
opened
3 years ago
0
Inconsistencies between output files
#15
ZoeHansen
opened
3 years ago
0
RGI main shows no perfect hits --> no further directories created --> how to interpret results?
#14
qducarmon
opened
3 years ago
5
snp_confirmation.py absents
#13
VoronDM
opened
3 years ago
0
Clarification on awk step showing $3="RequiresSNPConfirmation"
#12
MatteoSchiavinato
opened
3 years ago
3
Feature request: early-stage check for read names containing '#'
#11
MatteoSchiavinato
closed
2 years ago
1
No perfect hits with RGI: program crashes
#10
MatteoSchiavinato
closed
2 years ago
1
Host index uncertainty
#9
MatteoSchiavinato
closed
2 years ago
1
Program version for single-end reads
#8
MatteoSchiavinato
closed
2 years ago
5
The "this document" reference does not link to any document.
#7
MatteoSchiavinato
closed
2 years ago
1
kraken2 database error
#6
nysdan
closed
2 years ago
2
problem running RGI
#5
abissett
closed
2 years ago
9
Workaround for CARD database download
#4
DiegoBrambilla
closed
4 years ago
1
Problem during creation of the virtual environment
#3
DiegoBrambilla
closed
4 years ago
3
container creation failed error using Microbial_Ecology_Group_AMR_AMI
#2
milobrooks
closed
4 years ago
2
Skip processes in nextflow
#1
AroArz
closed
4 years ago
12