meglab-metagenomics amrplusplus_v2 issues

meglab-metagenomics / amrplusplus_v2

MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data

http://megares.meglab.org/

MIT License

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issues

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Unknown variable 'BWA' -- Make sure you didn't misspell it or define somewhere in the script before use it

#24 hhhhhywww opened 2 years ago
0
ExtractDedupSNP Error

#23 djbradshaw2 opened 2 years ago
0
Empty resistome and rarefaction results

#22 TakacsBertalan opened 2 years ago
0
main_AmrPlusPlus_v2_withRGI.nf

#21 XC-Zhai opened 3 years ago
1
RGI version

#20 jannemm opened 3 years ago
0
problems for installation

#19 chaichai9522 closed 3 years ago
0
Error running amr +++

#18 senukobla opened 3 years ago
0
Error messages from nextflow run main_AmrPlusPlus_v2_withRGI.nf

#17 srjun opened 3 years ago
1
Warning messages from nextflow run main_AmrPlusPlus_v2.nf

#16 srjun opened 3 years ago
0
Inconsistencies between output files

#15 ZoeHansen opened 3 years ago
0
RGI main shows no perfect hits --> no further directories created --> how to interpret results?

#14 qducarmon opened 3 years ago
5
snp_confirmation.py absents

#13 VoronDM opened 3 years ago
0
Clarification on awk step showing $3="RequiresSNPConfirmation"

#12 MatteoSchiavinato opened 3 years ago
3
Feature request: early-stage check for read names containing '#'

#11 MatteoSchiavinato closed 2 years ago
1
No perfect hits with RGI: program crashes

#10 MatteoSchiavinato closed 2 years ago
1
Host index uncertainty

#9 MatteoSchiavinato closed 2 years ago
1
Program version for single-end reads

#8 MatteoSchiavinato closed 2 years ago
5
The "this document" reference does not link to any document.

#7 MatteoSchiavinato closed 2 years ago
1
kraken2 database error

#6 nysdan closed 2 years ago
2
problem running RGI

#5 abissett closed 2 years ago
9
Workaround for CARD database download

#4 DiegoBrambilla closed 4 years ago
1
Problem during creation of the virtual environment

#3 DiegoBrambilla closed 4 years ago
3
container creation failed error using Microbial_Ecology_Group_AMR_AMI

#2 milobrooks closed 4 years ago
2
Skip processes in nextflow

#1 AroArz closed 4 years ago
12