Can you please clarify advise? For genotyping a specific subset of VNTRs from the n=158,522 VNTRs loci (i.e. a subset of the hg19_genic_VNTRs.db within vntr_data_genic_loci.zip):
1) Can the VNTRs be subsetted by specific VNTRs of interest within, if I specify chromosome and coordinates??
2) This input code could then just include this subsetted reference file...correct?
advntr genotype -m vntr_data subsettedfile.db -f filename.bam --working_directory ./ -of vcf -o filename_advntr.vcf
Thanks.
Can you please clarify advise? For genotyping a specific subset of VNTRs from the n=158,522 VNTRs loci (i.e. a subset of the hg19_genic_VNTRs.db within vntr_data_genic_loci.zip): 1) Can the VNTRs be subsetted by specific VNTRs of interest within, if I specify chromosome and coordinates?? 2) This input code could then just include this subsetted reference file...correct? advntr genotype -m vntr_data subsettedfile.db -f filename.bam --working_directory ./ -of vcf -o filename_advntr.vcf Thanks.