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mehrdadbakhtiari / adVNTR

A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
http://advntr.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
41 stars 15 forks source link

Build Data Base for other species #48

Closed BrendaLee1 closed 2 years ago

BrendaLee1 commented 3 years ago

Hi! I want to use advntr to generate VNTR data base for other species like no human primate and fruit fly. I have couple of questions:

  1. Can I use command below to generate my own PacBio VNTR dataset? advntr addmodel --reference reference.fa --chromosome chrosome --pattern Unit --start start --end end

  2. What dose the scaled_score mean in the VNTR datesets and what dose this score used for?

Best， Le