addmodel error

[BrendaLee1]

Hi, I tried to build database for my VNTRs, the following error occurred: Traceback (most recent call last): File "/rd1/laixh/soft/anaconda2/envs/snakemake/bin/advntr", line 33, in sys.exit(load_entry_point('advntr==1.5.0', 'console_scripts', 'advntr')()) File "/rd1/laixh/soft/anaconda2/envs/snakemake/lib/python3.10/site-packages/advntr-1.5.0-py3.10-linux-x86_64.egg/advntr/main.py", line 149, in main add_model(args, addmodel_parser) File "/rd1/laixh/soft/anaconda2/envs/snakemake/lib/python3.10/site-packages/advntr-1.5.0-py3.10-linux-x86_64.egg/advntr/advntr_commands.py", line 208, in add_model ref_vntr.init_from_vntrseek_data() File "/rd1/laixh/soft/anaconda2/envs/snakemake/lib/python3.10/site-packages/advntr-1.5.0-py3.10-linux-x86_64.egg/advntr/reference_vntr.py", line 45, in init_from_vntrseek_data repeat_segments = self.find_repeat_segments(corresponding_region_in_ref) File "/rd1/laixh/soft/anaconda2/envs/snakemake/lib/python3.10/site-packages/advntr-1.5.0-py3.10-linux-x86_64.egg/advntr/reference_vntr.py", line 82, in find_repeat_segments model = build_reference_repeat_finder_hmm(patterns, copies=self.estimated_repeats) File "/rd1/laixh/soft/anaconda2/envs/snakemake/lib/python3.10/site-packages/advntr-1.5.0-py3.10-linux-x86_64.egg/advntr/hmm_utils.py", line 674, in build_reference_repeat_finder_hmm model.bake() File "pomegranate/hmm.pyx", line 731, in pomegranate.hmm.HiddenMarkovModel.bake File "/rd1/laixh/soft/anaconda2/envs/snakemake/lib/python3.10/site-packages/networkx/classes/reportviews.py", line 194, in getitem return self._nodes[n] KeyError: 0

Any Suggestion?

[Jong-hun-Park]

Hi @BrendaLee1 Currently, adVNTR works only with python 3.6 or 2.7. Please create a new conda envs with python 3.6 and install it again.