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mehrdadbakhtiari
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adVNTR
A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data
http://advntr.readthedocs.io/
BSD 3-Clause "New" or "Revised" License
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cannot create my custom database
#22
jxlabWzZ
closed
3 months ago
3
advntr not working with hg19_genic_VNTRs.db
#21
philt31
closed
5 years ago
4
Add HMM APIs and skeleton code
#20
Jong-hun-Park
closed
5 years ago
0
Reading VNTR IDs from a file instead of command line
#19
mehrdadbakhtiari
opened
5 years ago
0
Only Coding VNTRs were genotyped
#18
npatel22526
closed
5 years ago
1
Output Files location and readme
#17
npatel22526
closed
5 years ago
11
Support CRAM input
#16
mehrdadbakhtiari
closed
5 years ago
1
sqlite3.OperationalError: unable to open database file
#15
clamp131
closed
6 years ago
2
FileNotFoundError: [Errno 2] No such file or directory: 'makeblastdb'
#14
wdecoster
closed
6 years ago
2
Convenient installation with PyPI and conda
#13
mehrdadbakhtiari
closed
6 years ago
5
IndexError: cannot do a non-empty take from an empty axes.
#12
nh13
closed
6 years ago
3
Consider creating a conda environment yaml
#11
nh13
closed
6 years ago
1
`hg19_chromosomes` is not described
#10
nh13
opened
6 years ago
0
muscle is not listed as a requirement
#9
nh13
closed
6 years ago
1
Settings.py needs to be better described
#8
nh13
closed
6 years ago
0
Describe vntr_data
#7
nh13
opened
6 years ago
0
:ref:`add-custom-vntr-label` not found in the README.rst
#6
nh13
closed
6 years ago
4
Fix link to the VNTR data
#5
nh13
closed
6 years ago
1
vntr data does not exists
#4
nh13
closed
6 years ago
1
pysam version 0.9.1.4 or above
#3
wdecoster
closed
6 years ago
1
python3
#2
wdecoster
closed
6 years ago
5
VCF output
#1
mehrdadbakhtiari
closed
4 years ago
0
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