`alg-dev` branch merge to `main`

mehta-lab / waveorder

Wave optical models and inverse algorithms for label-agnostic imaging of density & orientation.

BSD 3-Clause "New" or "Revised" License

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`alg-dev` branch merge to `main` #121

Closed talonchandler closed 11 months ago

talonchandler commented 1 year ago

The alg-dev branch has been the de-facto main branch for the last ~2 months, so I think it's a good idea for us to merge.

The major changes (discussed in their individual PRs to alg-dev) are:

new Stokes calculus (well tested with recOrder)
new models-based reconstructions with precalculation of transfer functions
cleaned and tested examples folder

talonchandler commented 1 year ago

I'm now planning to solve #122 before merging this.

talonchandler commented 12 months ago

I think this is ready to merge now. The highest priority fluorescence reconstructions have now moved to torch (see #122), and I now have a working implementation on the recOrder side.