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meichendong / SCDC

SCDC
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Issue with vignette (3 cell) #29

Open sistia01 opened 3 years ago

sistia01 commented 3 years ago

Hello,

I am trying to replicate the results on your vignette section but am struggling to find qc.3cl$sc.eset.qc

I was wondering if you could help me with this? I could not find sc.eset.qc as a variable within the qc.3cl dataset.

qc.3cl_2$sc.eset.qc NULL

The error that I receive is outlined below:

sc3cl.basis <- SCDC_basis_ONE(qc.3cl$sc.eset.qc, ct.varname = qc.3cl$md_cluster, sample =qc.3cl$orig.ident) Error in unique(x@phenoData@data[, ct.varname]) : trying to get slot "phenoData" from an object of a basic class ("NULL") with no slots

Thanks for your time!

meichendong commented 2 years ago

Hi @sistia01 , Sorry for the late response. For the error, please replace the "qc.3cl$sc.eset.qc" with "qc.3cl" in the function. Please email meichen@live.unc.edu if you have further questions.