search

meichendong / SCDC

SCDC
42 stars 9 forks source link

SCDC_qc() requires cbPalette #3

Closed t-carroll closed 4 years ago

t-carroll commented 4 years ago

When running SCDC_qc(), the function failed at the very end of the iteration process and threw the following error:

Error in seq.default(min(x, na.rm = T), max(x, na.rm = T), length.out = n + : object 'cbPalette' not found

From looking through the code it looks like this function expects the cbPalette to be in the users environment to draw the heatmap, and I did not have this installed. I was able to resolve this error by loading cbPalette manually with the following commands before running SCDC_qc(): install_github("wgaul/wgutil") library(wgutil) data(cbPalette)

For future users who may encounter this error, would it be possible to include cbPalette as a part of the installation process?

meichendong commented 4 years ago

Hi, Thanks for using SCDC! We have added the default values for the cbPalette in the function. It should work now.