Closed GoogleCodeExporter closed 8 years ago
Hello,
Can you please obtain a thread dump on the ytex java process that is launched
in the umls_aui_fword setup? Try ps -ef | grep java to get the list of java
processes, and then to a kill -quit <pid>. This will cause the jvm to spit out
a thread dump. Then post the thread dump.
Additional debugging:
* see if anything is being added to umls_aui_fword:
select count(*) from umls_aui_fword
* turn up debugging for SetupAuiFirstWord, in ytex\config\desc\log4j.properties
make following change
log4j.logger.ytex.tools.SetupAuiFirstWord=DEBUG
Original comment by vnga...@gmail.com
on 18 Jan 2012 at 9:31
Sorry, for the belated reply. Got sidetracked and then could not really figure
out how to get a thread dump as kill -quit with the PID did not work.
Used jstack for a thread dump and I hope that's ok. File is attached.
Added the line to log4j.properties
There are 0 rows in the umls_aui_fword table, BUT it is being created by the
script each time.
Original comment by snuf...@snuffy2.com
on 10 Feb 2012 at 6:40
Attachments:
The thread dump is unfortunately for the ant java process, not for the
SetupAuiFirstWord java process, so there is no useful information there.
In v0.5 we used the mysql command line client to run sql scripts, and jdbc to
load the umls_aui_fword table. There is most probably a problem with the jdbc
url - this is why running the scripts works, but running SetupAuiFirstWord
fails.
In v0.6 we use jdbc for the entire setup, and we check the jdbc connection
before attempting setup, so this problem will be caught much earlier.
Original comment by vnga...@gmail.com
on 28 Mar 2012 at 7:53
Original issue reported on code.google.com by
snuf...@snuffy2.com
on 13 Jan 2012 at 3:48