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melbournebioinformatics / MelBioInf_docs

Melbourne Bioinformatics documentation in markdown format
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bwa-mem: pull from quay.io #116

Closed mr-c closed 3 years ago

multimeric commented 3 years ago

I can't remember where I derived these CWL files from originally, but it's strange that this is the only one with sbg fields and the wrong docker image. Looks like a good fix though, thank you.

HadleyKing commented 3 years ago

@TMiguelT I was having the same issue with ALL of the CWL files you used in the tutorial, but just highlighted the BWA as an example. I am sorry if I didn't make that clear.

multimeric commented 3 years ago

Ah right I understand. I guess at the time I made this, the biocontainers had a :latest tag, but they no longer do. I need to update each CWL file with a specific version tag.

mr-c commented 3 years ago

Specifically you need to pull from quay.io and pick a tag, yes.