Ability to change y-axis of scatter plot to a different column

melonora / napari-cell-gater

A napari plugin for cell marker gating.

BSD 3-Clause "New" or "Revised" License

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Ability to change y-axis of scatter plot to a different column #1

Closed josenimo closed 3 months ago

josenimo commented 4 months ago

Cylinter implements a scatter plot that just uses channel-to-be-gated intensity on the x-axis, and Area of segmentation mask on y-axis.

Changing the y-axis to another marker in the quantification matrix can be beneficial. In cases where the markers are mutually exclusive (i.e. do not show co-expression), the orthogonality of the markers can provide better context than Area, and hopefully result in better gating decisions.

melonora commented 4 months ago

Hehe yeah this one I also had in mind.

josenimo commented 3 months ago

done with https://github.com/melonora/napari-cell-gater/pull/12