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melonora / napari-cell-gater

A napari plugin for cell marker gating.
BSD 3-Clause "New" or "Revised" License
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Remove stains of subset #2

Closed melonora closed 3 months ago

melonora commented 4 months ago

We might want to have a filter button which provides a text field to users to fill in a regex or substring based on which stains should be filtered out. This way we give the user flexibility and reduces hardcoded parts.

josenimo commented 4 months ago

I think 95% of the time DAPI and DNA should do the trick. But I agree, I like reducing the hardcoded variables.

Do you think it could be possible to create an Advance Options toggle menu? For these kind of 5% use cases? If it is too complicated, then we can leave it as it is right now.

melonora commented 4 months ago

hmm we could have it as the default value that is automatically filled.

josenimo commented 3 months ago

Thought about this today, DAPI and DNA are good defaults, I will rephrase to be more biologist friendly