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menchelab / Perturbome

Code to reproduce the study: Mapping the perturbome network of cellular perturbations.
MIT License
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question of server connected #2

Open saisaitian opened 2 years ago

saisaitian commented 2 years ago

Hi, I'm a PhD student and I enjoyed reading your paper! Some error ocoured ! Could you tell me how to solve it？

image

unfriend commented 2 years ago

Hi saisaitian, this is a call to open a database, you would need to host it somewhere using mysql (can also be on your local machine) here is a dump file that includes all the create commands and tables: https://ucloud.univie.ac.at/index.php/s/k3IP6in8BXH17oA

saisaitian commented 2 years ago

Thanks very much! I can do it well. In addition, the raw data of [Offsides.tsv], [SIDER.tsv] and [TwoSides.tsv], could you share it with me? These files were not found.

mcaldera commented 2 years ago

Hi Saisaitian,

Please check out this link for TwoSides and Offsides: https://tatonettilab.org/resources/nsides/

As well as this side for SIDER: http://sideeffects.embl.de/

Cheers, Michael

On 07.06.2022, at 19:18, saisaitian @.**@.>> wrote:

Thanks very much! I can do it well. In addition, the raw data of [Offsides.tsv], [SIDER.tsv] and [TwoSides.tsv], could you share it with me? These files were not found.

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